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PUBLICATIONS

2025

  • Ji-Won Chun, Jae-Chang Kim, Kyeong Seob Song, Jin-Young Kim, Min Kyung Hu, Joong Il Kim, In Young Choi, Tae-Min Kim, Dai-Jin Kim. The Role of the Salience Network in AdolescentImpulsivity: Insights from Memory Tasks and Neuroimaging. Research Square. doi:https://doi.org/10.21203/rs.3.rs-5475182/v1

2024

  • ​Sung Hak Lee, Dagyeong Lee, Junyong Choi, Hye Jeong Oh, In-Hye Ham, Daeun Ryu, Seo-Yeong Lee, Dong-Jin Han, Sunmin Kim, Youngbeen Moon, In-Hye Song, Kyo Young Song, Hyeseong Lee, Seungho Lee, Hoon Hur, Tae-Min Kim. (2024) Spatial dissection of tumour microenvironments in
    gastric cancers reveals the immunosuppressive crosstalk between CCL2+ fibroblasts and STAT3-activated macrophages. Gut 2024;0:1–14. doi:10.1136/gutjnl-2024-332901

  • Hong, S. H., & Kim, T. M. High-resolution genomic configuration of FGFR rearrangements dictates the therapeutic vulnerability of squamous cell lung cancers. Translational Lung Cancer Research. Link

  • Han, Dong-Jin, Sunmin Kim, Seo-Young Lee, Su Jung Kang, Youngbeen Moon, Hoon Seok Kim, Myungshin Kim, and Tae-Min Kim. "Cellular abundance-based prognostic model associated with deregulated gene expression of leukemic stem cells in acute myeloid leukemia." Frontiers in Cell and Developmental Biology 12: 1345660. Link

  • Sunmin Kim, Dong-Jin Han, Seo-Young Lee, Youngbeen Moon, Su Jung Kang and Tae-Min Kim. A Subset of Microsatellite Unstable Cancer Genomes Prone to Short Insertions over  Deletions Is Associated with Elevated Anticancer Immunity. Genes 2024, 15, 770. https://doi.org/10.3390/genes15060770

  • Dong‑Jin Han, Sunmin Kim, Seo‑Young Lee, Youngbeen Moon, Su Jung Kang, Jinseon Yoo,
    Hye Young Jeong, Hae Jin Cho, Jeong Yang Jeon, Byeong Chang Sim, Jaehoon Kim, Seungho Lee, Ruibin Xi and Tae‑Min Kim.     Evolutionary dependency of cancer mutations in gene pairs inferred by nonsynonymous-synonymous mutation ratios. Genome Medicine (2024) 16:103 https://doi.org/10.1186/s13073-024-01376-7

  • Kyung-A Kim, Sunmin Kim, Inbal Wortzel, Suho Lee, Yoon Dae Han, Tae-Min Kim & Han Sang Kim. Genome-wide methylation profiling reveals extracellular vesicle DNA as an ex vivo  surrogate of cancer cell-derived DNA. Scientific Reports (2024) 14:24110 | https://doi.org/10.1038/s41598-024-75287-3

2023

  • Kim, E., Han, D. J., Kim, B. H., Yoo, J., Kim, H. J., Wu, H. G., Kim, K. S., Kim, H. S., Han, I., Moon, K. C., Park, J. H., Song, S., Kim, T. M., & Chang, J. H. (2023). Whole-Genome Sequencing Reveals Mutational Signatures Related to Radiation-Induced Sarcomas and DNA-Damage-Repair Pathways. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc, 36(1), 100004. PMID: 36788076. PubMed

  • Kim, H. S., Kim, C. G., Kim, W. K., Kim, K.-A., Yoo, J., Min, B. S., Paik, S., Shin, S. J., Lee, H., Lee, K., Kim, H., Shin, E.-C., Kim, T.-M., & Ahn, J. B. (2023). Fusobacterium nucleatum induces a tumor microenvironment with diminished adaptive immunity against colorectal cancers [Original Research]. Frontiers in Cellular and Infection Microbiology, 13. https://doi.org/10.3389/fcimb.2023.1101291

  • Ryu, D., Kim, T. M., Lee, Y. H., & Ha, U. S. (2023). Longitudinal Analyses of Mutational Subclonal Architecture and Tumor Subtypes in Recurrent Bladder Cancer. International journal of molecular sciences, 24(9), 8418. PubMed

  • Lee, S.-Y.; Lee, Y.-H.; Kim, T.-M.; Ha, U.-S. Longitudinal Transcription Profiling of Bladder Cancers Dictate the Response to BCG Treatment and Disease Progression. Int. J. Mol. Sci. 2024, 25, 144. https://doi.org/10.3390/ijms25010144 

  • Taemin Kim, Sung Hak Lee, Dagyeong Lee, Junyong Choi, Hye Jeong Oh, In-Hye Ham, Daeun Ryu, Seo-Yeong Lee, Dong-Jin Han, Sunmin Kim, Seungho Lee, Hoon HurbioRxiv 2023.12.24.573275; doi: https://doi.org/10.1101/2023.12.24.573275

  • Jang-il Sohn, Min-Hak Choi, Dohun Yi, Vipin A. Menon , Yeon Jeong Kim, Junehawk Lee, Jung Woo Park, Sungkyu Kyung, Seung-Ho Shin, Byunggook Na, Je-Gun Joung, Young Seok Ju,Min Sun Yeom, Youngil Koh, Sung-Soo Yoon, Daehyun Baek, Tae-Min Kim & Jin-Wu Nam (2023). Ultrafast prediction of somatic structural variations by filtering out reads matched to pan-genome k-mer sets. Nature Biomedical Engineering. https://doi.org/10.1038/s41551-022-00980-5

2022

  • Lee SY, Wang H, Cho HJ, Xi R, Kim TM. The shaping of cancer genomes with the regional impact of mutation processes. Exp Mol Med. 2022 Jul;54(7):1049-1060. doi: 10.1038/s12276-022-00808-x. Epub 2022 Jul 28. PMID: 35902761; PMCID: PMC9355972. PubMed

  • Cho HJ, Hong SA, Ryu D, Hong SH, Kim TM. Transcriptional Profiling Reveals Mesenchymal Subtypes of Small Cell Lung Cancer with Activation of the Epithelial-to-Mesenchymal Transition and Worse Clinical Outcomes. Cancers (Basel). 2022 Nov 15;14(22):5600. doi: 10.3390/cancers14225600. PMID: 36428693; PMCID: PMC9688413. PubMed

  • Sohn JI, Choi MH, Yi D, Menon VA, Kim YJ, Lee J, Park JW, Kyung S, Shin SH, Na B, Joung JG, Ju YS, Yeom MS, Koh Y, Yoon SS, Baek D, Kim TM, Nam JW. Ultrafast prediction of somatic structural variations by filtering out reads matched to pan-genome k-mer sets. Nat Biomed Eng. 2022 Dec 19. doi: 10.1038/s41551-022-00980-5. Epub ahead of print. PMID: 36536253. PubMed

  • Kim, E., Han, D. J., Kim, B. H., Yoo, J., Kim, H. J., Wu, H. G., Kim, K. S., Kim, H. S., Han, I., Moon, K. C., Park, J. H., Song, S., Kim, T. M., & Chang, J. H. (2023). Whole-Genome Sequencing Reveals Mutational Signatures Related to Radiation-Induced Sarcomas and DNA-Damage-Repair Pathways. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc, 36(1), 100004. https://doi.org/10.1016/j.modpat.2022.100004 PMID: 36788076. PubMed

2021
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The Catholic University of Korea, College of Medicine

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